BtaEX0018591 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21746630-21750788:-
Coord C1 exon
chr22:21750604-21750788
Coord A exon
chr22:21747393-21747430
Coord C2 exon
chr22:21746630-21746778
Length
38 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTTCCTTTCCTACAGCTA
3' ss Score
11.88
5' ss Seq
AGGGTACAT
5' ss Score
3.77
Exon sequences
Seq C1 exon
CCAAGAGCCGGGCCATTGCCATTCCCGTGGACTTGGACAGTCAGGTCAACAACCTCTTCCTCAAGTCCCACAACCTCGTGCAGAAAACCGCCATGAACTGGCGGCTGACGGCCCGCAATGCTGCCCGCAGAGACTCTGTCCTGGCCGCTTCCAGGGACTACCGGAACATCATCGAGAGACTGCAG
Seq A exon
CTATGTGTTTTGCATTTGAAGACCATCATGCTATCAGG
Seq C2 exon
GACATCGTCTCGGCCCTGGAGGACCGTCTCCGGCCCCTGGTGCAGGCCGAGTTATCTGTGCTGGTGGATGTCCTCCACCGGCCCGAGCTGCTCTTCCCGGAGAACACGGACGCCAGGAGGAAGTGTGAAAGCGGGGGCTTCATCTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'39-38,'39-37,40-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.092
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000054653fB3513
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAGGGACTACCGGAACA
R:
AGGACATCCACCAGCACAGAT
Band lengths:
112-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development