MmuEX0025195 @ mm9
Exon Skipping
Gene
ENSMUSG00000059022 | Kcp
Description
kielin/chordin-like protein [Source:MGI Symbol;Acc:MGI:2141640]
Coordinates
chr6:29434811-29435560:-
Coord C1 exon
chr6:29435418-29435560
Coord A exon
chr6:29435003-29435175
Coord C2 exon
chr6:29434811-29434922
Length
173 bp
Sequences
Splice sites
3' ss Seq
CTGTTTGGGTCGGGGGCCAGGAT
3' ss Score
2.77
5' ss Seq
CAGGTACGA
5' ss Score
10.03
Exon sequences
Seq C1 exon
ACCCTACCCAGTCATGCATGCATCAGGGTCGCTGGGTGGCCTCTGGAGAACAGTGGGCAGTGGATGCCTGCACCAGCTGCTCCTGTGTGGCTGGTACTGTGCACTGCCAGACCCAGCGCTGCAGGAAGCTCGCATGTAGCCGG
Seq A exon
GATGAGGTCCCTGCCCTGAGTCCCGGCAGCTGCTGTCTCCGCTGTTTGCCCCGGCCGGCTTCCTGCATGGCCTTCGGAGACCCCCATTACCGCACCTTCGATGGCCGCCTGTTGCACTTCCAAGGCAGCTGCAGCTACGTGCTGGCCAAGGACTGCCACGGCGAGGACTTCAG
Seq C2 exon
TGTGCACGTGACTAATGATGACCGGGGCCGGAGGGGTGTGGCCTGGACCCAAGAGGTAGCAGTGCTGTTGGGAACCGTGGCTGTGAGGCTGCTGCAGGGCAGGACAGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059022-'36-43,'36-41,37-43
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(72.4=87.5)
A:
PF0009313=VWC=PD(24.1=24.1),PF0009420=VWD=PU(87.8=62.1)
C2:
PF0009420=VWD=FE(24.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCATGCATGCATCAGGGT
R:
ATGACTGTCCTGCCCTGCA
Band lengths:
246-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: