BtaEX6028523 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003449 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr4:93658093-93658858:-
Coord C1 exon
chr4:93658716-93658858
Coord A exon
chr4:93658288-93658460
Coord C2 exon
chr4:93658093-93658204
Length
173 bp
Sequences
Splice sites
3' ss Seq
GTGTGCGGGGCGGAGGCCAGGAC
3' ss Score
-3.9
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
CCCCCGCCCCGTCGTGCGCGCACCAGGGCCGGCAGGTGGCCTCCGGGGAGCGCTGGGACGTGGACGCCTGCACCAACTGCTCCTGCATGGCAGGCACCGTGCGCTGCCAGAGCCAGCGCTGCCCGCCGCTCTCCTGTGGGCCC
Seq A exon
GACGAGGCCCCCGCCCTGAGTCCCGGCAGCTGCTGTCCTCGCTGCCTGCCCCGGCCCGCTTCCTGCATGGCCTTCGGAGACCCTCATTACCGCACCTTCGACGGCCGCCTGCTGCACTTCCAGGGCAGCTGTAGCTACGTGCTGGCCAAGGACTGCCGTGGCGGGGACTTCAG
Seq C2 exon
CGTGCACGTGACCAACGATGACCGGGGCCGGAGCGGCGTGTCCTGGACCCAGGAAGTGGCTGTGCTGCTGGGAGACGTGGCCGTGCGGCTGCTGCAGGACAGGGCGGTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003449-'50-55,'50-54,51-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(72.4=87.5)
A:
PF0009313=VWC=PD(24.1=24.1),PF0009420=VWD=PU(24.0=62.1)
C2:
PF0009420=VWD=FE(24.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGACGTGGACGCCTG
R:
CGTGACCGCCCTGTCCTG
Band lengths:
203-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]