GgaEX7001570 @ galGal4
Exon Skipping
Gene
ENSGALG00000004919 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr2:408250-408959:+
Coord C1 exon
chr2:408250-408420
Coord A exon
chr2:408492-408691
Coord C2 exon
chr2:408857-408959
Length
200 bp
Sequences
Splice sites
3' ss Seq
CACTCACCCCCCCACTGCAGGCG
3' ss Score
7.78
5' ss Seq
CCGGTACCC
5' ss Score
5.04
Exon sequences
Seq C1 exon
TGGAGGGCTCGCTGGGACAATGCCATGCCAGCTGGCAGTGCCAGGACGCAGTGGGTGCCCACAACCTCTCCACCGTGAGCATGGCCGAGTGCTGCCGCCAGCCCTGGGGGCACAGCTGGAGGAACGGCTCCTCTGCGCTCTGCTTCGCCTGCAGCCGGCAGCCCCTCACCG
Seq A exon
GCGATGTACCCCTGCCCACAGCACCGCGGGGTCCTGCCGCCCGGCACCGCGGTCCCACTGCCAGCTGCACCGTATGGGCCGGATCCCGGTACCGCAGCTTCGATGGGCGGCACTTTGGCTTCCAGGGCGAGTGTGCCTACAGCCTGGCCGCCTCCACTGACAGCACCTGGGCTGTCAGCATCACCCCAGGCAGCCTGCCG
Seq C2 exon
GTGCTGCACATGACTTTCGGGTTGGACACAGTAGTGGCACGGGGACACAACATCTCTGTGAATGGCGTGGCAGTGCCAGAGGGGCGGCAGCACCTGCATGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'4-5,'4-4,5-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.149 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009420=VWD=PU(31.2=65.7)
C2:
PF0009420=VWD=FE(24.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGCTCGCTGGGACAAT
R:
CACTGCCACGCCATTCACAG
Band lengths:
244-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]