MmuEX6004265 @ mm9
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48399364-48400169:+
Coord C1 exon
chr6:48399364-48399543
Coord A exon
chr6:48399734-48399978
Coord C2 exon
chr6:48400070-48400169
Length
245 bp
Sequences
Splice sites
3' ss Seq
TCCTGCATCATCTTGCTCAGGCA
3' ss Score
4.8
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
CCCTTGCTGAAACCAGCCCTAAAGGTCATTGCTTTGTCACATGGCATTGCCAACCTCTAGCAGGCTCAGCTAACTCTTCGGCAGGAAGCCTAGAGGAATGCTGTGCCCAACCCTGGGGACACAGCTGGTGGAACAGCAGCTCCCAGATGTGCCTCAGCTGTTCTGGTCAGCACCGCCCAG
Seq A exon
GCAATGCTTCCTCTGAAGGCCTCCTGCAGCCTCTGGCAGGAGCTGTAGGCCAGCTCTGGAGCCAGCGCCAGCGTCCCTCAGCCACCTGTGCCACCTGGTCTGGCTTCCACTACCAAACTTTTGACGGACATCACTACCACTTCCTGGGCCAGTGTACCTACTTGCTAGCTGGTGCTATGGATTCCACCTGGGCTGTCCACCTCAGGCCTAGTGTCCACTGTCCCCAGCATAGACACTGCTGGCTG
Seq C2 exon
GTTCAAGTGGTGATGGGCCCTGAGGAGGTATTGATCCAAGATGGAGAGGTCTCTGTGAAGGGCCAGCCAGTGCCTGTTGGGGAGCCTCAGCTGCTCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.012 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009420=VWD=PU(35.1=63.4)
C2:
PF0009420=VWD=FE(22.3=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGCCCTAAAGGTCATTGC
R:
GCTGAGGCTCCCCAACAGG
Band lengths:
260-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: