DreEX6064108 @ danRer10
Exon Skipping
Gene
ENSDARG00000078508 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr18:6949392-6958928:-
Coord C1 exon
chr18:6958659-6958928
Coord A exon
chr18:6953385-6953557
Coord C2 exon
chr18:6949392-6949503
Length
173 bp
Sequences
Splice sites
3' ss Seq
TGATCTGCTCATTTGTGTAGGAT
3' ss Score
7.87
5' ss Seq
CAGGTGCTC
5' ss Score
3.6
Exon sequences
Seq C1 exon
AAAGGGCACATTGAGTGTGACCTGCAGGAGTGTGCTCCGCTCCAGTGTCCGGATGGATCCGTTAAAGTCAAGAACCCGGGGAAGTGCTGTCAAGAGTGCACAGAGGTGGTAGATGTGGTGTACATATACCCTAGTGCAGAGTGTGTGTACGAGGGACAGATATATAGAGACAGTGACCAATGGGAAGTGGACGAGTGTACGACCTGCACCTGTGTGAATGGAGATGTGCACTGCCAAACCCAGAGATGCCCAACGCTCACATGTGCCTCG
Seq A exon
GATGAAACGCCAGCTCTGGTTCCTGGGATGTGTTGTCCTCACTGTATTCCTCACCCTGCCACCTGCGTTGTCTTTGGAGATCCTCACTACCGAACATTTGACGGAAAGATGGTGCATTTCCAGGGCACCTGCACATACGTTCTGGCTCAGGACTGTGAGGGCGGAGACTTCAG
Seq C2 exon
TGTCCATGTGTCCAATGAGGACCGGGGACGTAAAGGAGTGTCTTGGACTAAAGAGGTGACCGTGTTTATTGGAGATGTTGTGATACAGCTTTATCAGGACTGGATTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078508-'47-46,'47-45,48-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(51.6=35.6),PF0009313=VWC=PU(72.4=46.7)
A:
PF0009313=VWC=PD(24.1=24.1),PF0009420=VWD=PU(24.0=62.1)
C2:
PF0009420=VWD=PU(25.2=96.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCAAGAACCCGGGGAAGT
R:
AGACACTCCTTTACGTCCCCG
Band lengths:
249-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]