MmuEX0025827 @ mm10
Exon Skipping
Gene
ENSMUSG00000030167 | Klrc1
Description
killer cell lectin-like receptor subfamily C, member 1 [Source:MGI Symbol;Acc:MGI:1336161]
Coordinates
chr6:129677147-129678910:-
Coord C1 exon
chr6:129678724-129678910
Coord A exon
chr6:129678296-129678397
Coord C2 exon
chr6:129677147-129677322
Length
102 bp
Sequences
Splice sites
3' ss Seq
CCTTGCATTTCTCTCTGAAGGTT
3' ss Score
9.89
5' ss Seq
CATGTAAGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
ATGAGTAATGAACGCGTCACCTATGCAGAACTGAAGGTGGCAAAGAACTCAAGGAACCAGCACAGGAAACCAAGGGGTCCTCGCAGCTCCATTTCAGTCATCGAGCAGGAAATCATCTATTCGGACTTCAGCTTTCAAAATCCTTCTCAGGAGCATCCCTGGATCTGCAGGAATTGCCCCTGCAAAG
Seq A exon
GTTTTCCATCTCCTCCAGAGAAACTCATTGCTGGTACCCTGGGCCTCATCTGTTTTGTCTTAATTGTCGCTGTGGTTGTAATTACTACAGTTGCCACACCAT
Seq C2 exon
ATATAAACTACACTCTATCTTCAGCACAGCCTTGTCCTCATTGTCCAAAGGAGTGGATATCATATTCTCACAATTGTTATTTCATTGGTATGGAGAGAAAATCTTGGAATGACAGTTTGGTGTCCTGCATTTCCAAAAACTGTAGTCTGCTTTACATAGATAGTGAAGAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030167_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083915=Ly49=PU(53.4=88.6)
C2:
PF083915=Ly49=PD(15.5=15.3),PF0005916=Lectin_C=PU(28.1=45.8)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGCAGCTCCATTTCAGTCA
R:
TGGAAATGCAGGACACCAAACT
Band lengths:
243-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types