HsaEX6065173 @ hg38
Exon Skipping
Gene
ENSG00000134545 | KLRC1
Description
killer cell lectin like receptor C1 [Source:HGNC Symbol;Acc:HGNC:6374]
Coordinates
chr12:10449914-10451187:-
Coord C1 exon
chr12:10450970-10451187
Coord A exon
chr12:10450484-10450579
Coord C2 exon
chr12:10449914-10449967
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCCCATTTCTCTCCCTGCAGATT
3' ss Score
13.09
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
AGTACAGTCCCTGACATCACACACTGCAGAGATGGATAACCAAGGAGTAATCTACTCAGACCTGAATCTGCCCCCAAACCCAAAGAGGCAGCAACGAAAACCTAAAGGCAATAAAAACTCCATTTTAGCAACTGAACAGGAAATAACCTATGCGGAATTAAACCTTCAAAAAGCTTCTCAGGATTTTCAAGGGAATGACAAAACCTATCACTGCAAAG
Seq A exon
ATTTACCATCAGCTCCAGAGAAGCTCATTGTTGGGATCCTGGGAATTATCTGTCTTATCTTAATGGCCTCTGTGGTAACGATAGTTGTTATTCCCT
Seq C2 exon
CTACATTAATACAGAGGCACAACAATTCTTCCCTGAATACAAGAACTCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134545-'2-6,'2-5,3-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.316
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGGCAGCAACGAAAACCT
R:
TCAGGGAAGAATTGTTGTGCCT
Band lengths:
172-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains