HsaEX6065173 @ hg19
Exon Skipping
Gene
ENSG00000134545 | KLRC1
Description
killer cell lectin-like receptor subfamily C, member 1 [Source:HGNC Symbol;Acc:6374]
Coordinates
chr12:10602513-10603786:-
Coord C1 exon
chr12:10603569-10603786
Coord A exon
chr12:10603083-10603178
Coord C2 exon
chr12:10602513-10602566
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCCCATTTCTCTCCCTGCAGATT
3' ss Score
13.09
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
AGTACAGTCCCTGACATCACACACTGCAGAGATGGATAACCAAGGAGTAATCTACTCAGACCTGAATCTGCCCCCAAACCCAAAGAGGCAGCAACGAAAACCTAAAGGCAATAAAAACTCCATTTTAGCAACTGAACAGGAAATAACCTATGCGGAATTAAACCTTCAAAAAGCTTCTCAGGATTTTCAAGGGAATGACAAAACCTATCACTGCAAAG
Seq A exon
ATTTACCATCAGCTCCAGAGAAGCTCATTGTTGGGATCCTGGGAATTATCTGTCTTATCTTAATGGCCTCTGTGGTAACGATAGTTGTTATTCCCT
Seq C2 exon
CTACATTAATACAGAGGCACAACAATTCTTCCCTGAATACAAGAACTCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134545-'1-2,'1-1,2-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.325 A=0.000 C2=0.316
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGGCAGCAACGAAAACCT
R:
TCAGGGAAGAATTGTTGTGCCT
Band lengths:
172-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)