RnoEX0047523 @ rn6
Exon Skipping
Gene
ENSRNOG00000055196 | Klrc1
Description
killer cell lectin like receptor C1 [Source:RGD Symbol;Acc:2976]
Coordinates
chr4:163462548-163463718:-
Coord C1 exon
chr4:163463532-163463718
Coord A exon
chr4:163463110-163463211
Coord C2 exon
chr4:163462548-163462598
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTTTGCATTTCTCCCTGAAGGTT
3' ss Score
9.96
5' ss Seq
CATGTAAGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
ATGAGTAATGATCGAGTCACCTATGCAGAACTGAATGTGGCCAAGAACTCAAGGTACCAGCACAACAAACCAAGGGGCAGTCGCAGCTCCATTTCAGTAATAGAGCAGGAAATCGTTTATGCGGATTTCAGCTTTAAAAATCCTTCTCAAGAGCAGACCCGGATCTGCAGGGATTGCCACTGCAAAG
Seq A exon
GTTTTCCATCTCCTCCAGAAAAACTCATTGCTGGGACCCTGGGCTTCATCAGTTTTGTCTTAATTGTTGCTGTGGTTGTAATTACTACAGTTGCCACACCAT
Seq C2 exon
ATACTGAAACAAAGGCACAGATCAACTCCTCAATGACGAGAACCTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055196-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTAATGATCGAGTCACCTATGCA
R:
TGGTAGGTTCTCGTCATTGAGGA
Band lengths:
234-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]