MmuEX0026431 @ mm9
Exon Skipping
Gene
ENSMUSG00000023022 | Lima1
Description
LIM domain and actin binding 1 [Source:MGI Symbol;Acc:MGI:1920992]
Coordinates
chr15:99632542-99637002:-
Coord C1 exon
chr15:99636854-99637002
Coord A exon
chr15:99633073-99633092
Coord C2 exon
chr15:99632542-99632643
Length
20 bp
Sequences
Splice sites
3' ss Seq
ATCCCTGTCTTTCTTTCCAGGCC
3' ss Score
12.54
5' ss Seq
ATGGTCAGT
5' ss Score
6.57
Exon sequences
Seq C1 exon
GTCATTTGTCTTCCTCTGCATTCAACTCGGAGAAAAACGAGAGTAAGAGGAATCTGGAGCTGCCACGCCTCTCAGAAACCTCCATAAAGGACCGCATGGCCAAGTACCAGGCTGCAGTGTCCAAGCAGAGCAGCCCAGCCAGCTACACA
Seq A exon
GCCGGGCATTTGTATCTATG
Seq C2 exon
AATGAGCTGAAAACCAGTGAAAGCAAAACTCATAAATGGGAACAGAAGGAGAATGTGCCCCCAGGTCCCGAGGCCTGCAGCGTCCATCAGGAAGGAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023022-'11-11,'11-10,12-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.920 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTACCAGGCTGCAGTGTC
R:
GGGGCACATTCTCCTTCTGTT
Band lengths:
110-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: