RnoEX0049973 @ rn6
Exon Skipping
Gene
ENSRNOG00000059801 | Lima1
Description
LIM domain and actin binding 1 [Source:RGD Symbol;Acc:1564050]
Coordinates
chr7:141452321-141456403:-
Coord C1 exon
chr7:141456255-141456403
Coord A exon
chr7:141452847-141452866
Coord C2 exon
chr7:141452321-141452422
Length
20 bp
Sequences
Splice sites
3' ss Seq
ATCCCTGTCTTTCTTTCCAGGCC
3' ss Score
12.54
5' ss Seq
GTGGTCAGT
5' ss Score
4.85
Exon sequences
Seq C1 exon
GTCATTTGTCTTCCTCTGCCTTCAACTCGGAGAAAAATGAGAGTAAGCGGAATCTGGAGCTGCCACGCCTCTCTGAGACCTCCATAAAGGACCGCATGGCCAAGTACCAGGCTGCCGTGTCCAAGCAGAGCAGCCCAGCCAGCTACGCA
Seq A exon
GCCGAGCCTTTATATCTGTG
Seq C2 exon
AGTGAGCTGAAACCCAGTGAAAGCAAAACTCACAAATGGGAGCAGAAGGAGAACGTGCCCCCCGGCCCCGAGGCCTGCAGCATCCATCAGGAAGGGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059801-'17-7,'17-6,18-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.945 A=0.000 C2=0.980
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000091702fB7889
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGCCAAGTACCAGGCTG
R:
ACGTTCTCCTTCTGCTCCCAT
Band lengths:
111-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]