MmuEX0027442 @ mm9
Exon Skipping
Gene
ENSMUSG00000028649 | Macf1
Description
microtubule-actin crosslinking factor 1 [Source:MGI Symbol;Acc:MGI:108559]
Coordinates
chr4:123361384-123364549:-
Coord C1 exon
chr4:123364449-123364549
Coord A exon
chr4:123362623-123362677
Coord C2 exon
chr4:123361384-123361484
Length
55 bp
Sequences
Splice sites
3' ss Seq
GTCCCTCCCCCACTGTGCAGATG
3' ss Score
9.56
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
CGGGGGGCGGGGGGCTCGGCGCCGCGAGCTCGGCCATTGTGGGAGCCGCTCCCCTCCGCCGCACCGCAGCCGCCCGCCGGCCTCCTCCTCGCGCTCACAGG
Seq A exon
ATGATGAAACTGAGTCCCTGAGAGGTGGAGTGACTTGACCCCGATCTCGACAACT
Seq C2 exon
ATCCCTTCTCCCAGGACATCTGGTCCTTCCTGTAGCCACTCTTGCTTGGACCATGTCTTCCTCTGATGAAGAAACGCTCAGTGAGCGATCCTGTCGGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028649-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTCGGCCATTGTGGG
R:
ACATGGTCCAAGCAAGAGTGG
Band lengths:
132-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: