MmuEX0028042 @ mm9
Exon Skipping
Gene
ENSMUSG00000037236 | Matr3
Description
matrin 3 [Source:MGI Symbol;Acc:MGI:1298379]
Coordinates
chr18:35747285-35751699:+
Coord C1 exon
chr18:35747285-35747507
Coord A exon
chr18:35747986-35748107
Coord C2 exon
chr18:35750034-35751699
Length
122 bp
Sequences
Splice sites
3' ss Seq
ATGTATGTTTGTGTTTCTAGGTA
3' ss Score
10.42
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTGGACAAGATTGAGGAACTTGATCAAGAAAATGAAGCTGCATTGGAAAATGGGATTAAAAATGAGGAAAATACAGAACCGGGTGCCGAATCTGCTGAGAATGCTGATGATCCAAACAAAGACACAAGTGAAAATGCAGATGGCCAAAATGATGAGAATAAGGAGGATTATACAATTCCCGATGAGTATAGAATCGGACCATATCAGCCTAATGTTCCTGTTG
Seq A exon
GTATAGACTATGTGATACCTAAAACAGGGTTTTACTGTAAGCTGTGTTCACTCTTTTATACAAATGAAGAAGTTGCAAAGAATACTCATTGCAGCAGCCTTCCTCATTATCAGAAATTAAAG
Seq C2 exon
AAATTTCTGAATAAATTGGCAGAAGAACGGAGGCAGAAGAAGGAAACTTAAGATGTACAAGAAGCTTAATTCAAAGAAAACGATGGTTCTTTGATTTTAATGTTAACCTTTTTTAAAATACAATACTGATAGTTAGAAAACTACTGTACACTTTTGTTTTAGTGGAAAATAATAGATGTCTGTTGTGTTTAAGTGTTATAGCAAAAAGTACACATACGGTTAAGTTAATGAAAATGTTTTTGTTTCATCCGAGTGACAACAGACAAAAGTACTTCCTAAAGATTGACTGTTGTAAGCTATGGAAAACAACTTGCACCACTAAGAGAAAGATAACATAGAACCATTCAGAAAAATGAAACTTAGTAGTTTGAGGCTTCAAAGAAATGTCAACTTCTGATTCCATTCAATAAAGAACAAAACCAATTGTATTTTTTTTTACTTTTCATCTGAAACATTCCACATTTTAATCTGAGCCTTGCAGACTTTTCATTTGACTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037236-'32-19,'32-17,33-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.960 A=0.073 C2=0.688
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGAAAATGAAGCTGCATTGGA
R:
TCCTTCTTCTGCCTCCGTTCT
Band lengths:
244-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: