DreEX6004471 @ danRer10
Exon Skipping
Gene
ENSDARG00000104169 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr7:19373654-19375184:-
Coord C1 exon
chr7:19375062-19375184
Coord A exon
chr7:19373989-19374110
Coord C2 exon
chr7:19373654-19373882
Length
122 bp
Sequences
Splice sites
3' ss Seq
CTGCTTTGTCTGTTCCACAGGTA
3' ss Score
11.23
5' ss Seq
GAGGTACAA
5' ss Score
5.13
Exon sequences
Seq C1 exon
AAGAGTCCAAGGAACGGCGTGAGATTGACCCAGTAGAGGAACCCGAAGCCAAGAGGTCCCGCTCCCAGTCCCCTCTTATTGAAGACTTCACTATGCCCCCGTTCAACCCAGACAACCCCATTG
Seq A exon
GTATTGATTTTGTGATTCCCAGGACCGGTTTCTTCTGCAAACTTTGCTCTTTGTTCTACGTCAACGAGGATACAGCTAAGAAAAGTCACTGTAGTAGTTTAAAGCATTACCAGAACATGGAG
Seq C2 exon
AAATACTATAAGAAGCAGAAGTCTCAGCAGCAGCAGGGTGGCTCTTCATCACAGTCAGCAGCCAGTCAAGGTTCAGCATCTGAATAGCCTTTATTAAGAGCTTTTGTTTGTTTAGTTTCTTTTCTTTGTATTATTGCTACCGGATGGGTCCAATTGCTTTAATTTTATTTGTTCTTGTTTAGAATTTATTAGCTCATGCTAAATAAAGACATCACAAACTCAAGTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104169-'31-35,'31-34,32-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.122 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF062207=zf-U1=PU(89.5=82.9)
C2:
PF062207=zf-U1=PD(5.3=6.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAGTAGAGGAACCCGAAG
R:
ACCCATCCGGTAGCAATAATACA
Band lengths:
245-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]