GgaEX0003113 @ galGal3
Exon Skipping
Gene
ENSGALG00000002478 | Q8UWC5_CHICK
Description
NA
Coordinates
chr13:2203355-2207401:-
Coord C1 exon
chr13:2207008-2207401
Coord A exon
chr13:2206296-2206417
Coord C2 exon
chr13:2203355-2204737
Length
122 bp
Sequences
Splice sites
3' ss Seq
TGTGGTGTTTACTTCTCTAGGTG
3' ss Score
10.82
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CGATACGTGGGTGGCTTTCCACGGAGCATGGAAGGCTTTGTCACTCTAGATGAGGTTGGTGATGAAGAAGACTCAGATCATCAGAAACTTCGGAAGTCGGGTTTGGCAGTAAAATCTGCTGGCAAAAATGATGATAGTTTGGCAGAAATCAAAGTAGACAAGATTGAGGAGCCAGAGCAGGAAAATGAAACGTTAGAAAATGGTACCAAGACTGAAGATAATCTGAAGGCTGAAGCTGTTGAAGCTTCCGACACCACAGCAGCACAAGATCCTGAGAAAAATGCCCATGAAAATATAGACACCCAGGATGAACAGGAAACAAAGAGTGTCCAAGAGAAAGCTCTTATTCCAGATGAATTTAGGATTGGGCCATACCAGCCAAATGTTCCTGTTG
Seq A exon
GTGTGAATTATGTGGTACCCAAAACAGGGTTTTATTGCAAATTGTGTTCCCTGTTCTACACAAATGAAGATGTTGCAAAAAAGACCCATTGCAGCAGCCTTCCTCATTATCAAAAGTTGAAG
Seq C2 exon
AAAATTCTGGATAAAATGGCAGAAGACTACAGGCAAAAGAAAGAAGCATAAAAAGAAGGATGGATGTAAGGAAAACAGTGGCTTTGTTCTTATTGTTAATCTTTTTTTAAAAGCAGTACAAGTAGTAGATGGAAATACTGTATTCTTTTTTTTTGTTTTAGTGAGATACAGTAGATGTTATAGGTCTGTTCATGTGTTCAGTGTTGTAGCAAAAAGCATAAGCAGTTAAGTTAATGAAAAAAATTTGTTCTTCATGTGGGAATGGCAACAAGTTTTCGTTTTGACACTGAGCTATTAAAGAAAAAATCTTGCATCCTTGTGGAACGCTCGTCTATGGCAAGAAAATTTTCTTGAAGTGAAATTTACTACTTTCAAGCTTCGAAAATTCGCCTATCCATTCTCAATAAAAAATAAAAAGTAACACTGTATTTTTATTTCATCTAGAACATTCCGTATTTCAGTCTGAGCCTAGCAGATACTTAATTTGGAGTGTGAGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002478_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.871 A=0.000 C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTGAAGCTTCCGACACCA
R:
AGCCACTGTTTTCCTTACATCCA
Band lengths:
242-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]