BtaEX6046351 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012274 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:16744]
Coordinates
chr11:98806164-98807258:-
Coord C1 exon
chr11:98807189-98807258
Coord A exon
chr11:98806868-98806989
Coord C2 exon
chr11:98806164-98806504
Length
122 bp
Sequences
Splice sites
3' ss Seq
TAGACCCTGCTGTCCTTCAGGGG
3' ss Score
6.31
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATGAGATCCAGAGACATATCCATAGAGGAGTGGAAAGGCTCAGAGACCTACAGCCCCAACACCGCATACG
Seq A exon
GGGTGGACTTCCTGGTGCCCGTGATGGGCTATGTCTGCCGCGTCTGCCACAAGTTCTACCACAGCAACTCGGGGGCGCAGCTCTCCCACTGCAAGTCCTTGGCCCACTTTGAGAACCTGCAG
Seq C2 exon
AAATACAAGAAGGCCAAGAAACCCAGCCCCACCACCAGGCCCTTGAGCCGCCGGTGTGCCATCAACGCCCGGAACGCCCTGACCGCTCTGTTCACCGCTGGCGGCCGTGCACCCAGCCAGCCCAGCACCCAGGACACAGCCAAAACCCCCAGCAAGGTGATGCCCACACCCCCTCGGCCCCGACTGCCCCGGCGCTCCAGACGCCTCAGAACCTGATGGAGGAAGCACCCCATGCCCGCCCCATCTCAGTCCCAATGGGCTAAGCTTTTTAGGAGTCTGTGTGGAGACTTTGATATGGTCGGTATTTTTACTGAAAATCCAATAAAGGAAGGAGTTTGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012274-'20-35,'20-34,22-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.000 C2=0.845
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGAGACCTACAGCCCCAA
R:
TCCTCCATCAGGTTCTGAGGC
Band lengths:
255-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]