DreEX0021841 @ danRer10
Exon Skipping
Gene
ENSDARG00000089461 | ciz1b
Description
cdkn1a interacting zinc finger protein 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2933]
Coordinates
chr5:62966965-62972403:-
Coord C1 exon
chr5:62972331-62972403
Coord A exon
chr5:62971993-62972114
Coord C2 exon
chr5:62966965-62967665
Length
122 bp
Sequences
Splice sites
3' ss Seq
ATGTACTTTCTGACCCTCAGGCA
3' ss Score
7.8
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CATCCTGCTCACAGAGAGATGGCTCCGGAAGAGACGGCTGCTTATGAGGCTTATGATCCAGACACGCAATATG
Seq A exon
GCACTAGTTTTGTGGTCCCTGTCGCTGGTTTTCTCTGTAAGCTGTGTCATAAATTCTACCACTTCGAGTCTTCTGCACGGGAAACTCACTGCAGGTCTCTTGTGCACTTCCAGAACCTACAG
Seq C2 exon
AAGCACAACGCTCTGAAGATGCAGAAGAAGACATCTCATAATGACTGTGAAAGTGATGTGTCATCTAACAGCCCGATGAGAGACCCTCCAGGCTCTTCCTGCACCAATGAGATGTCAGCGATTTCTGACAGCAGCCAATCAGATCTCAGCAGATCTCGTGTCAGTTCCTTTAGAGAGCACTTACACTCGAGGAAGCTCAAACCATCTAAAAAACCCCGCAAATCAAAATCTGCACGCTCAAAATGCTCTGTAGCTCCTCAGAAGTCTGCCGTGGTCATGAAACACTTCATTTGTGCTCCACACGGTGGCTCAAGGTCAAGTCTAGAGTCACACTGCCGAGAAAGCAATAAGCCTGACTCAAGTGTTCAAATGCAACACGTAGAATGTGAGTCTAGTGTAAAAGAAAAGATTTCCTGTGACCCGGTGGATTACTTAGTAGAGCGTGAAATTGTAAACTCAACACCCACACACTGTTTGTGGCATGTGTCAGGGTTGGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089461_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.680 A=0.000 C2=0.662
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAGAGACGGCTGCTTATG
R:
GGTTTGAGCTTCCTCGAGTGT
Band lengths:
251-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]