HsaEX6063181 @ hg19
Exon Skipping
Gene
ENSG00000148337 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:16744]
Coordinates
chr9:130928343-130929443:-
Coord C1 exon
chr9:130929374-130929443
Coord A exon
chr9:130929038-130929159
Coord C2 exon
chr9:130928343-130928685
Length
122 bp
Sequences
Splice sites
3' ss Seq
CCTGCCATCCCATCCTACAGGTG
3' ss Score
10.14
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGAGGTCCAGAGATATATCCAGAGAGGAGTGGAAGGGCTCGGAGACCTACAGCCCCAATACTGCATATG
Seq A exon
GTGTGGACTTCCTGGTGCCCGTGATGGGCTATATCTGCCGCATCTGCCACAAGTTCTATCACAGCAACTCAGGGGCACAGCTCTCCCACTGCAAGTCCCTGGGCCACTTTGAGAACCTGCAG
Seq C2 exon
AAATACAAGGCGGCCAAGAACCCCAGCCCCACCACCCGACCTGTGAGCCGCCGGTGCGCAATCAACGCCCGGAACGCTTTGACAGCCCTGTTCACCTCCAGCGGCCGCCCACCCTCCCAGCCCAACACCCAGGACAAAACACCCAGCAAGGTGACGGCTCGACCCTCCCAGCCCCCACTACCTCGGCGCTCAACCCGCCTCAAAACCTGATAGAGGGACCTCCCTGTCCCTGGCCTGCCTGGGTCCAGATCTGCTAATGCTTTTTAGGAGTCTGCCTGGAAACTTTGACATGGTTCATGTTTTTACTCAAAATCCAATAAAACAAGGTAGTTTGGCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148337-'46-50,'46-47,48-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.022 C2=0.855
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGACCTACAGCCCCAATA
R:
CTATCAGGTTTTGAGGCGGGT
Band lengths:
243-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)