DreEX0021835 @ danRer10
Exon Skipping
Gene
ENSDARG00000089781 | ciz1a
Description
cdkn1a interacting zinc finger protein 1a [Source:ZFIN;Acc:ZDB-GENE-100922-222]
Coordinates
chr5:1184374-1190340:-
Coord C1 exon
chr5:1190262-1190340
Coord A exon
chr5:1188948-1189069
Coord C2 exon
chr5:1184374-1186206
Length
122 bp
Sequences
Splice sites
3' ss Seq
TGTTTGGTTGTTGTCATCAGGAT
3' ss Score
7.42
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
GAGGGTCTTTCTGCACAGATGGAGGTCACAATGGAAGATCTGGATGAAGACGAGGAGTTTGACTCAGACACAGTGTATG
Seq A exon
GATCTAGTTTTGTGGTTCCTGTGTCCGGGTTTCTCTGTCGACTCTGTGATCAGTTTTATCACTATGAGTCTTCGGCTCGACACGCTCACTGCAAGACCCTCAAACACTTCCAGAATCTGAAG
Seq C2 exon
CGTTATAAAGCCTTAAAGAAGCATGAAGACTCGGGTTCAACCTCAGCAGAAGCAGCAGAAGAAGTAGCAGTAGCAGCAGCAGAGGGACTCCTCATCGCAGAAGAAAGCTCTGTGGATCCGTCAGCGTCCCCGATCACCAACACCAGCAGTACACCACCACAGCAGGAGGAAAAACTGGAGCCGGAGGAGACTCTGAAGCCAGAACCAGAACCGGAGTCGGAGCTGGAAGAGAAACTAGAGCCGGAGCCAGAGCTGGAGGAGAGGAGCAGTGAACGCGGCCGCGGCAGGACCTCAGCCAAGAGGAGAGGACGAGGAGGACGGCGGCGCTGACACGCAGCACAGGACCTCAGTGAAAGCACCCTCAGCTGTCCCTCCATTAGGGTTCGTGCCACACTCTCGACCTCTGACCCTGTTTGTACAGTAGTGTTTTAATGAGCACAAGCAGCTCCGCTCCAGAGGAGGACGAGGAGGATGATGATGTGCGCTTTAGTGTTTCATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089781_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.741 A=0.000 C2=0.972
Domain overlap (PFAM):
C1:
PF049887=AKAP95=FE(16.5=100)
A:
PF049887=AKAP95=FE(25.3=100)
C2:
PF049887=AKAP95=PD(12.7=18.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCACAGATGGAGGTCACA
R:
CTCCGGCTCCAGTTTTTCCTC
Band lengths:
256-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]