RnoEX0021399 @ rn6
Exon Skipping
Gene
ENSRNOG00000013442 | Ciz1
Description
CDKN1A interacting zinc finger protein 1 [Source:RGD Symbol;Acc:1305336]
Coordinates
chr3:11406262-11407068:+
Coord C1 exon
chr3:11406262-11406331
Coord A exon
chr3:11406452-11406573
Coord C2 exon
chr3:11406916-11407068
Length
122 bp
Sequences
Splice sites
3' ss Seq
ACCCTGCTGTCTGTCCCCAGGTG
3' ss Score
14.25
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CTGCAGTCAAGAGAAACATCTTCAGAGCAATGGAAGGACTCTGAGACTTACAGCCCCAACACGGCCTATG
Seq A exon
GTGTGGACTTCCTGGTGCCAGTGATGGGCTATGTCTGCCGAATCTGTCACAAGTTCTACGACAGTAACTCAGAATTTCGGCTCTCTCACTGCAAGTCTCTGGCCCACTTTGAGAACCTGCAG
Seq C2 exon
AAATACAAAGCCAAGAACCCCAGCCCTCCTACCCGGCCTGTGAGCCGCAAGTGTGCGATCAACGCCCGCAACGCCCTGACTGCACTGTTCACCTCTAGCAGTGGTAGCAGCCGCCAGCCCAGCCCCCAGGACACTGTGAAGATACCCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013442-'23-36,'23-35,24-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.745
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTCAAGAGAAACATCTTCAGA
R:
GCTGGGTATCTTCACAGTGTCC
Band lengths:
219-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]