MmuEX1006866 @ mm10
Exon Skipping
Gene
ENSMUSG00000039205 | Ciz1
Description
CDKN1A interacting zinc finger protein 1 [Source:MGI Symbol;Acc:MGI:1920234]
Coordinates
chr2:32377293-32378297:+
Coord C1 exon
chr2:32377293-32377362
Coord A exon
chr2:32377509-32377630
Coord C2 exon
chr2:32377964-32378297
Length
122 bp
Sequences
Splice sites
3' ss Seq
CTGCTGTCGTCTGTCCCCAGGTG
3' ss Score
12.43
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTGAAGCCGAGAGAAACATCCTCAGAGCAAGGGAAGGGCTCTGAGACGTACAACCCCAACACAGCCTATG
Seq A exon
GTGAGGATTTCCTGGTGCCAGTGATGGGCTATGTCTGTCAAATCTGTCACAAGTTCTACGACAGCAACTCAGAATTGCGGCTTTCTCACTGCAAGTCCCTGGCCCACTTTGAGAACCTGCAG
Seq C2 exon
AAATACAAAGCCAAGAACCCAAGCCCTCCTCCTACCCGGCCTGTGAGCCGCAAGTGTGCCATCAACGCCCGCAACGCCCTGACTGCACTGTTCACCTCTAGCCACCAGCCCAGCCCCCAGGACACAGTGAAAATGCCCAGCAAGGTGAAGCCTGGATCCCCCGGACTCCCTCCTCCCCTTCGGCGCTCAACACGCCTCAAAACCTGATAGAGGGAGCTCTGGCCACTCAGCCTGACTAAGGCTCAGTCTGCTAATGCTTCCTAGGTATCTGTGTAGAAATGTTCAAGTGGTTGGTGTTTTTACTCAAAATCCAATAAAGAGTCAGTAGTTTGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039205-'41-60,'41-58,42-60
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.952 A=0.000 C2=0.862
Domain overlap (PFAM):
C1:
PF052857=SDA1=FE(14.1=100)
A:
PF052857=SDA1=FE(24.5=100)
C2:
PF052857=SDA1=PD(14.1=47.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGGGCTCTGAGACGTACA
R:
TCAGGTTTTGAGGCGTGTTGA
Band lengths:
246-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types