GgaEX0006565 @ galGal3
Exon Skipping
Gene
ENSGALG00000004789 | CIZ1
Description
NA
Coordinates
chr17:5720943-5725009:+
Coord C1 exon
chr17:5720943-5721012
Coord A exon
chr17:5722090-5722211
Coord C2 exon
chr17:5724833-5725009
Length
122 bp
Sequences
Splice sites
3' ss Seq
CTTCCCCTCCCGTTTCACAGGCC
3' ss Score
11.52
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
Exon sequences
Seq C1 exon
ACTGGGCTGAAGGAAGTGTCTTTGGAGGATTACAAAGGAAGTGAGAAGTATTGTCCAGATACAGCCTATG
Seq A exon
GCCTGGATTTTCTGGTCCCCGTCGCAGGTTACCTCTGCAGGCTGTGTCACAAATTCTACCATAGCGACTCTGCTGCCCGGCTCGCACACTGCAAGTCCCTGATGCATTTTGAGAACTTTCAG
Seq C2 exon
AGATACAAGGTAGCAAGGCATCGTGCCACAGCTGCCTATCCGGAGGCTCCCTTGCATTCCCAGGGCTCCGGCTCCCAGTTGCTAGATGATCAGAAACAGCCTCCTGCTACAACAGAAGATAGCAGCAAGAAGACGAATGCCAATCACGGGATAGACAAGGAGGGTACAGAGCTGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004789_MULTIEX1-12/13=11-13
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.000 C2=0.849
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGGCTGAAGGAAGTGTCT
R:
ACAGCTCTGTACCCTCCTTGT
Band lengths:
245-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]