BtaEX6043243 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009242 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr11:13155560-13158589:-
Coord C1 exon
chr11:13158500-13158589
Coord A exon
chr11:13157612-13157730
Coord C2 exon
chr11:13155560-13155881
Length
119 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTCTGAATTTTCAAGATT
3' ss Score
7.09
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
AATCTGGATTAGAGGATTCAGAACCAGAACAGAAACGCAAGAAGATTGAGGACTCTTCAGGGAGATCAGTGGCACCTGATGTCCCTGAAG
Seq A exon
ATTTAGACTTTCTTGTACCGAAGGCTGGATTCTTCTGTCCAATTTGTTCCCTCTTCTACTCAGATGAAAAAGCAATGACAAATCACTGCAAGAGTACACGTCATAAGCAAAATACAGAG
Seq C2 exon
AAGTTCATGGCCAAGCAAAGAAAGGAAAAGGAGCAGAATGAGGCTGAAGAAAGAAGCTCTAGGTGATTGAGGGGGTGGGGGGAAGAATTCATTAGAAATTTGTTTAGGGTCCAGTTGATTTGTGTATTTTTGTTATCACTTAATTTGTAATTTTTGTTTCAGAAGCAGATATTCATGTTGTACAAATTTCTGATTGCCCTTGATGTAGAGAGACTGATGGGGAAAGTATGATGGGTTTGATTTTTATATCAAATCATCAGGCATGGAGAAATATCTTTTAGAAGTGTTAAAATAAATGTTCCTACTGTATATTTAAAATATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009242-'32-42,'32-40,34-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.375 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF121713=zf-C2H2_jaz=WD(100=67.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCAGTGGCACCTGATGTCC
R:
TCAGTCTCTCTACATCAAGGGCA
Band lengths:
244-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]