HsaEX6013861 @ hg38
Exon Skipping
Gene
ENSG00000075292 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr2:71431327-71435061:+
Coord C1 exon
chr2:71431327-71431428
Coord A exon
chr2:71433165-71433283
Coord C2 exon
chr2:71434742-71435061
Length
119 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTTCTTATCCTCTAGAAT
3' ss Score
11.02
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TTGATGAGGAATCTGGATTAAAGGATTCAGAACCAGAGCGAAAACGCAAGAAGACTGAAGACTCTTCTTCAGGCAAATCAGTGGCGTCTGATGTCCCTGAGG
Seq A exon
AATTAGACTTTCTTGTACCTAAGGCTGGATTCTTCTGTCCAATTTGTTCCCTCTTCTACTCAGGTGAAAAAGCAATGACAAATCACTGCAAGAGTACACGTCATAAGCAAAATACTGAG
Seq C2 exon
AAATTCATGGCCAAGCAAAGAAAGGAAAAGGAGCAGAATGAGGCTGAAGAAAGAAGCTCTAGGTGATTGGGGGAAAGGAAAGAATTCACTAGAAATTTGTTTAGGGTCCAGTTGATTTGTGTATTTTTGTTATCATTTAATTTGTAATTTTCGTTTCAGAAGCAAATATTCGTGTTGTACAAATTTCTGATTGCCCTAAATGTAGAGAGACTGATGGGGAAAGTATGATGGGTTTGATTTTTATATCAAATCATCAGGCATGGAGAAATATCTTTTAGAAGTGTTAAAATAAATGTTCCTACTGTATATTTAAAATACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075292-'100-104,'100-99,104-104
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.950 A=0.358 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF121713=zf-C2H2_jaz=WD(100=67.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAATCAGTGGCGTCTGA
R:
ACTTTCCCCATCAGTCTCTCT
Band lengths:
255-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains