RnoEX6014068 @ rn6
Exon Skipping
Gene
ENSRNOG00000014501 | Zfp638
Description
zinc finger protein 638 [Source:RGD Symbol;Acc:1309746]
Coordinates
chr4:115682513-115685484:+
Coord C1 exon
chr4:115682513-115682611
Coord A exon
chr4:115683382-115683500
Coord C2 exon
chr4:115685170-115685484
Length
119 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTTCCTGTCTTCTAGATT
3' ss Score
11.53
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
TTGATGAAGCTGAACTAAAGGATTTAGAACCTGATGAAAAACGTAGGAAGATTGAAGACTCTTCTATAGGCAAATCAGTGACATCTGATGTCTCTGGAG
Seq A exon
ATTTAGACTTTCTTGTTCCGAAGGCTGGATTTTTCTGCCCAATTTGCTCCCTCTTCTACTCAGGTGAAAAAGCAATGGCAAATCACTGCAAGAGCACACGTCACAAACAAAATACAGAG
Seq C2 exon
AAGTTCATGGCCAAGCAAAGGAAGGAAAAGGAGCAGAATGAGACTGAAGAAAGAAGCTCTAGGTGATGGAGGAGAGGAGGGAAGAACTCAGTAGAGATTCATTTAGGGTCCAGTTGATTTGTGTATTTTTGTTATCATTTAATTTGTAATTTTTGTTTCAGAAACATATTCATGTTGTACAAATTTCTGATTGCCCTTGATGTAGAGAAACTGATGGGAAAATATGATGGGTTTGATTTTTATATCAAATCATCAGGCATGGAAATACCTTTTAGAAATGTTAAAATAAATGTTCCTACTGTATATTTCAACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014501-'39-46,'39-43,41-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.765 A=0.342 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF121713=zf-C2H2_jaz=WD(100=67.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAAATCAGTGACATCTGA
R:
TCAGTTTCTCTACATCAAGGGCA
Band lengths:
246-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]