HsaEX6013861 @ hg19
Exon Skipping
Gene
ENSG00000075292 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:17894]
Coordinates
chr2:71658457-71662187:+
Coord C1 exon
chr2:71658457-71658558
Coord A exon
chr2:71660295-71660413
Coord C2 exon
chr2:71661872-71662187
Length
119 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTTCTTATCCTCTAGAAT
3' ss Score
11.02
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TTGATGAGGAATCTGGATTAAAGGATTCAGAACCAGAGCGAAAACGCAAGAAGACTGAAGACTCTTCTTCAGGCAAATCAGTGGCGTCTGATGTCCCTGAGG
Seq A exon
AATTAGACTTTCTTGTACCTAAGGCTGGATTCTTCTGTCCAATTTGTTCCCTCTTCTACTCAGGTGAAAAAGCAATGACAAATCACTGCAAGAGTACACGTCATAAGCAAAATACTGAG
Seq C2 exon
AAATTCATGGCCAAGCAAAGAAAGGAAAAGGAGCAGAATGAGGCTGAAGAAAGAAGCTCTAGGTGATTGGGGGAAAGGAAAGAATTCACTAGAAATTTGTTTAGGGTCCAGTTGATTTGTGTATTTTTGTTATCATTTAATTTGTAATTTTCGTTTCAGAAGCAAATATTCGTGTTGTACAAATTTCTGATTGCCCTAAATGTAGAGAGACTGATGGGGAAAGTATGATGGGTTTGATTTTTATATCAAATCATCAGGCATGGAGAAATATCTTTTAGAAGTGTTAAAATAAATGTTCCTACTGTATATTTAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075292-'66-73,'66-71,67-73=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.971 A=0.350 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF121713=zf-C2H2_jaz=WD(100=67.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAATCAGTGGCGTCTGA
R:
ACTTTCCCCATCAGTCTCTCT
Band lengths:
255-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)