MmuEX6005210 @ mm10
Exon Skipping
Gene
ENSMUSG00000030016 | Zfp638
Description
zinc finger protein 638 [Source:MGI Symbol;Acc:MGI:1203484]
Coordinates
chr6:83983976-83989550:+
Coord C1 exon
chr6:83983976-83984074
Coord A exon
chr6:83984777-83984895
Coord C2 exon
chr6:83986558-83989550
Length
119 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTTTCTGTCTTTTAGATT
3' ss Score
12.94
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
TTGATGACGCTGAACTAAAGGATTCAGAACCTGATGAAAAACGCAGGAAGACTCAAGACTCTTCTGTAGGCAAATCAATGACATCTGATGTCCCTGGAG
Seq A exon
ATTTGGACTTTCTTGTTCCGAAGGCTGGATTTTTCTGTCCAATTTGCTCCCTCTTCTACTCAGGTGAAAAAGCAATGGCAAATCACTGCAAGAGCACACGTCATAAACAAAATACAGAG
Seq C2 exon
AAGTTCATGGCCAAGCAAAGAAAGGAAAAGGAGCAGAATGAGACTGAAGAAAGAAGCTCTAGGTGATGGAGGAAAGGAGAAAAGAATTCATTAGAAATTCATTTAGGGTCCAGTTGATTTGTGTATTTTTGTTATCATTTAATTTGTAATTTTTTTGTTTCAAAAGCATATTCATGTTGTACAAATTTCTGATTGCCCTTGATGTAGAGAAACTGATGGGAAAATATGATGGGTTTGATTTTTATATCAAATCATCAGGCATGGATAATACCTTTTAGAAGTGTTTAAATAAATGTTCCTACTGTATATTTCAACACTGTTGTGTTTGTGTTGATTTGTAAAGGCTTGCTTGCCTCTGGTTACAGACAAGGCTCTTCTCCACAACCCTGGGATTTAGAGTATTTGGCAGTTCATGTGTTTCTGGAAGTAATAGTATGATATGTTACTTTGTCTCAACCATCCATGTATATAGGTCTGATTCTTATATGTTCAGTTTTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030016-'62-70,'62-69,66-70=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.375 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF121713=zf-C2H2_jaz=WD(100=67.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCAGGAAGACTCAAGACTCT
R:
AGGGCAATCAGAAATTTGTACAACA
Band lengths:
258-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types