MmuEX0030525 @ mm9
Exon Skipping
Gene
ENSMUSG00000034593 | Myo5a
Description
myosin VA [Source:MGI Symbol;Acc:MGI:105976]
Coordinates
chr9:75033702-75037807:+
Coord C1 exon
chr9:75033702-75033929
Coord A exon
chr9:75035329-75035337
Coord C2 exon
chr9:75037707-75037807
Length
9 bp
Sequences
Splice sites
3' ss Seq
TTGCCAATGTGATTTTTCAGGAT
3' ss Score
9.01
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
CGTCAAGAACTGGAGTCAGAAAACAAAAAACTGAAAAACGAGCTGAATGAGTTGCGCAAAGCCCTCAGTGAGAAAAGTGCCCCAGAAGTGACTGCGCCAGGTGCGCCTGCTTACCGAGTCCTCATGGAACAGCTGACCTCCGTGAGCGAGGAGCTCGACGTGCGCAAGGAGGAAGTCCTCATCTTGAGGTCGCAGCTGGTGAGCCAAAAAGAAGCCATCCAACCCAAG
Seq A exon
GATGACAAG
Seq C2 exon
AATACAATGACAGATTCCACAATTCTTTTAGAAGATGTACAGAAAATGAAAGACAAAGGTGAAATAGCACAAGCATATATTGGTTTGAAAGAAACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034593-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.543 A=1.000 C2=0.436
Domain overlap (PFAM):
C1:
PF075586=Shugoshin_N=WD(100=30.3)
A:
NO
C2:
NO


Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGAGCCAAAAAGAAGCCA
R:
TGCTTGTGCTATTTCACCTTTGT
Band lengths:
107-116
Functional annotations
There are 2 annotated functions for this event
PMID: 16981716
Microexon B constitutes an essential part of the DYNLL2 binding site. A brain-specific isoform in which exon B is skipped can no longer interact with DYNLL2. These data show that alternative splicing of the myosin Va heavy chain controls DYNLL2-myosin Va interaction and that DYNLL2 binding alters the structure of a portion of the myosin's coiled-coil domain. These results suggest that exon B could have a significant impact on the conformation and regulatory folding of native myosin Va, as well as on its interaction with certain cargos.
PMID: 17029413
DLC2 was found to bind as a homodimer to a approximately 15 residue segment (Ile1280-Ile1294) localized between the medial and distal coiled-coil domains of the tail of MYO5A. The binding region contains the three residues coded by the alternatively spliced microexon B (Asp1284-Lys1286). Removal of microexon B eliminates DLC2 binding. Co-localization experiments in a transfected mammalian cell line confirm the finding that exon B is essential for DLC2 binding.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: