MmuEX0039201 @ mm9
Exon Skipping
Gene
ENSMUSG00000040043 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:MGI Symbol;Acc:MGI:1861776]
Coordinates
chr10:127572053-127574623:-
Coord C1 exon
chr10:127574530-127574623
Coord A exon
chr10:127572710-127572787
Coord C2 exon
chr10:127572053-127572163
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTTTGCTTATGTTAGAGA
3' ss Score
5.15
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GTTCTACGCAGCTCCTTACAGTATCGCCCACAGCAGGATGCTTGCTCAATCTGCGCTAGCCCCGTATCTTCCATCTCCTGTGTCTTCCTATCAG
Seq A exon
AGAGTGACTCAGACATCTCCTCTACAAGTACCTAACCCATCTTGGATGCAATACCAGTTGTACTTCACGCAGCCTTCA
Seq C2 exon
GGCTCAGTTCTGACACCAGGGATGGACCACCCCCTCTCTCTCCAGCCTGCCTCCATGATGGGACCTCTTACCCAGCAACTGGGTCACCTGTCACTCAACAGTCTGGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040043_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.192 C2=0.328
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTACAGTATCGCCCACAGC
R:
TGAGTGACAGGTGACCCAGTT
Band lengths:
178-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: