BtaEX6022197 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017830 | RBMS2
Description
Bos taurus RNA binding motif, single stranded interacting protein 2 (RBMS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001034365]
Coordinates
chr5:57168749-57174311:-
Coord C1 exon
chr5:57174218-57174311
Coord A exon
chr5:57169200-57169277
Coord C2 exon
chr5:57168749-57168859
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTCGCTTCCATTAGAGA
3' ss Score
6.27
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GTTTTACCCAGCTCCTTACAACCTCGCCCCCAACAGGATGCTCACTCAGTCTGCACTGTCCCCGTATCTTCCATCTCCTATGACGTCATATCAG
Seq A exon
AGAGTAACTCAGACATCTCCTCTACAAGCACCTAGCCCGTCTTGGATGCACCACCAGTCATACCTCATGCAGCCTTCA
Seq C2 exon
GGTTCAGTTCTGACACCAGGAATGGACCATCCCATTTCTCTCCAGCCTGCCTCCATGGTGGGACCTCTTACCCAGCAGTTGGGCCACCTCTCTCTCAGCAGCACGGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017830-'22-20,'22-19,24-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.219 A=0.769 C2=0.541
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAGCTCCTTACAACCTCG
R:
AACTGCTGGGTAAGAGGTCCC
Band lengths:
169-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]