RnoEX0074757 @ rn6
Exon Skipping
Gene
ENSRNOG00000003076 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:RGD Symbol;Acc:1304813]
Coordinates
chr7:2555798-2558245:-
Coord C1 exon
chr7:2558105-2558245
Coord A exon
chr7:2556473-2556550
Coord C2 exon
chr7:2555798-2555908
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTTGATTATATCAGAGA
3' ss Score
5.69
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GGTGGAATGGCCTTGACCTATGACCCCACCACAGCTCTTCAGAATGGGTTCTACACAGCTCCTTACAGTCTCGCCCACAGCAGAATGCTCGCTCAGTCTGCACTAGCCCCGTATCTTCCATCGCCCGTGTCTTCCTACCAG
Seq A exon
AGAGTGACTCAGACATCTCCTGTACAAGTACCTAACACATCTTGGATGCAACAGCAGTCGTACCTCATGCAGCCTTCA
Seq C2 exon
GGCTCAGTTCTGACACCAGGGATGGACCACCCCCTCTCTCTCCAGCCTGCCTCCATGATGGGACCTCTTACTCAGCAACTGGGGCACCTGTCACTCAACAGCCTGGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003076_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.092 A=0.500 C2=0.405
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCTCCTTACAGTCTCGC
R:
GTGCCCCAGTTGCTGAGTAAG
Band lengths:
175-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]