DreEX0061385 @ danRer10
Exon Skipping
Gene
ENSDARG00000056150 | rbms2b
Description
RNA binding motif, single stranded interacting protein 2b [Source:ZFIN;Acc:ZDB-GENE-040801-51]
Coordinates
chr23:25830807-25832860:+
Coord C1 exon
chr23:25830807-25830900
Coord A exon
chr23:25832621-25832671
Coord C2 exon
chr23:25832750-25832860
Length
51 bp
Sequences
Splice sites
3' ss Seq
GTGTCTCCTCTGGATTTTAGGTA
3' ss Score
9.4
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GTTTTACTCTCCTTCCTACAGCATCGCTCCGAACAGAATTATTGCTCAGACTTCTATTTCTCCCTACATGCACTCGCCTGTATCCACATACCAG
Seq A exon
GTACACAATCCCTCCTGGATACATCACCAGTCTTACCTCATGCAGCCTACA
Seq C2 exon
GGTACCGTCCTCACACCCTCGGTCGACCACACCATGACCATCCAGCCCACTGCCATAATAGGGCCTCTCACACAGCAGCTCAGCCATCTGACCCTGGGCACCACAGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056150-'8-13,'8-12,9-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=0.000 C2=0.297
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCATCGCTCCGAACAGAAT
R:
CCTATTATGGCAGTGGGCTGG
Band lengths:
138-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]