MmuEX0041139 @ mm9
Exon Skipping
Gene
ENSMUSG00000078441 | Scamp4
Description
secretory carrier membrane protein 4 [Source:MGI Symbol;Acc:MGI:1928947]
Coordinates
chr10:80072075-80073874:+
Coord C1 exon
chr10:80072075-80072203
Coord A exon
chr10:80072386-80072542
Coord C2 exon
chr10:80073773-80073874
Length
157 bp
Sequences
Splice sites
3' ss Seq
CATCTATGTCCCTCTTCCAGTTT
3' ss Score
9.77
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
Exon sequences
Seq C1 exon
GAAAGGAGAACAACTTCCCCCCACTGCCTCCCTTCCTGCCACTGAAGCCCTGCTTCTACCAGGACTTCTCTGATGAGATCCCCGTGGAGCACCAGGTGCTGGTGAAGAGGATCTACCGGCTGTGGATGT
Seq A exon
TTTACTGTGCCACTCTGGGTGTGAACCTGGTGGCCTGCCTGGCCTGGTGGATTGCGGGCGGAGCTGGTGCCAATTTTGGCCTGGCCTTGCTCTGGCTGGTTCTCTTCACTCCCTGCAGTTATGTGTGCTGGTTCCGGCCTGCATACAAGGCCTTCCG
Seq C2 exon
AGCCGACAGCTCCTTTAACTTCATGACATTCTTCTTCATCTTTGGAGCCCAGTTTGTGCTGACTGTCATTCAGGCCATTGGCTTCTCGGGCTGGGGCGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078441-'9-9,'9-8,10-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=PU(23.7=95.5)
A:
PF041448=SCAMP=FE(29.4=100)
C2:
PF041448=SCAMP=FE(19.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGGAGAACAACTTCCCCC
R:
CAGCCCGAGAAGCCAATGG
Band lengths:
222-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: