RnoEX0078306 @ rn6
Exon Skipping
Gene
ENSRNOG00000018271 | Scamp4
Description
secretory carrier membrane protein 4 [Source:RGD Symbol;Acc:68354]
Coordinates
chr7:11973956-11975699:-
Coord C1 exon
chr7:11975571-11975699
Coord A exon
chr7:11975182-11975338
Coord C2 exon
chr7:11973956-11974057
Length
157 bp
Sequences
Splice sites
3' ss Seq
TCCATCTGTGTCCCCTCCAGTTT
3' ss Score
9.54
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
Exon sequences
Seq C1 exon
GAAAGGAGAACAACTTCCCCCCGCTGCCTCACTTCCTGCCGCTGAAGCCCTGCTTCTACCAGGACTTCTCTGATGAGATCCCGGTGGAGCACCAGGTGCTGGTGAAGAGGATCTACCGGCTGTGGATGT
Seq A exon
TTTACTGCACCACGCTGGGTGTAAACCTAGTGGCCTGCCTGGCCTGGTGGATTGCGGGCGGAGCGGGTGCCAATTTTGGCCTGGCCATGCTCTGGCTTGTTCTCTTCACTCCCTGCAGCTATGTGTGCTGGTTCCGGCCTGCCTACAAGGCCTTCCG
Seq C2 exon
AGCCGACAGCTCCTTTAACTTCATGGCATTCTTCTTCATCTTTGGAGCCCAGTTTGTGCTGACTGTCATTCAGGCCATCGGCTTCTCGGGCTGGGGCGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018271_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=PU(23.7=95.5)
A:
PF041448=SCAMP=FE(29.4=100)
C2:
PF041448=SCAMP=FE(19.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGGAGAACAACTTCCCCC
R:
CAGCCCGAGAAGCCGATG
Band lengths:
222-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]