GgaEX0001089 @ galGal3
Exon Skipping
Gene
ENSGALG00000001030 | SCAMP4
Description
NA
Coordinates
chr28:1754361-1756630:-
Coord C1 exon
chr28:1756502-1756630
Coord A exon
chr28:1754967-1755123
Coord C2 exon
chr28:1754361-1754462
Length
157 bp
Sequences
Splice sites
3' ss Seq
TTCCTGCGCTCTCTTTGCAGTTT
3' ss Score
11.7
5' ss Seq
TCGGTATGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
AGAAGGTGAATAACTTCCCACCGCTCCCCAAATTCATCCCCCTGAAGCCCTGCTTCTACCAGAACTTTTCGGATGAGATACCCATCGATTATCAGTCCCTGGTGAAGAGGATCTACCACGTCTGGATCT
Seq A exon
TTTACTGCATCACGCTGGTCGTGAACATCATTGCCTGCCTGGCGTGGTGGATTGGAGGTGGCTATGGTGTCAACTTTGGCTTGGCCATCCTCTGGCTGATCCTCTTCAGCCCCTGCAGCTACGTCTGCTGGTTCCGACCGGTGTACAAAGCCTTTCG
Seq C2 exon
GTCGGACAGCTCCTTTAATTTCATGACCTTCTTCTTCGTCTTCGGCATGCAGTTCGTCCTCACCTTCCTGCAGGCAGTGGGTTTCTCCGGATGGGGAGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001030_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=PU(23.7=95.5)
A:
PF041448=SCAMP=FE(29.4=100)
C2:
PF041448=SCAMP=FE(19.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGTGAATAACTTCCCACCG
R:
TCCCCATCCGGAGAAACCC
Band lengths:
226-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]