MmuEX0042928 @ mm10
Exon Skipping
Gene
ENSMUSG00000011486 | Slc25a41
Description
solute carrier family 25, member 41 [Source:MGI Symbol;Acc:MGI:2144215]
Coordinates
chr17:57039818-57041654:-
Coord C1 exon
chr17:57041574-57041654
Coord A exon
chr17:57041196-57041301
Coord C2 exon
chr17:57039818-57039973
Length
106 bp
Sequences
Splice sites
3' ss Seq
CTACCCCCACCCCTCTCCAGCCT
3' ss Score
6.15
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
AGCTGGGAGCCAGATAGACGCCCCAGAGGACGCTGAGACTGGGACCTTAATCCTTCAGCAACTATGGGAGTCCATCTCGAG
Seq A exon
CCTACCCTACCACCATCTGAAGCATGGAACCCAAGGTGCACACACATGTATGAGTATGTTTGGACATGTGGGTGAGAACAACCCTGAGCATCCTTCATCATAGCAG
Seq C2 exon
GTTCTGGACACGGGAGAGCAGCTGATGGTCCCTGTGGATGTCTTGGAAGAGGAAAACAAGGGGACCCTGTGGAAGTTTCTGCTCTCTGGAGCCATGGCTGGGGCAGTGTCTCGCACAGGGACAGCACCTCTGGACAGAGCCAGGGTGTACATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011486_MULTIEX2-2/3=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0015322=Mito_carr=PU(35.1=63.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAGCCAGATAGACGCC
R:
CTGCATGTACACCCTGGCTCT
Band lengths:
234-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types