MmuEX6078684 @ mm10
Exon Skipping
Gene
ENSMUSG00000011486 | Slc25a41
Description
solute carrier family 25, member 41 [Source:MGI Symbol;Acc:MGI:2144215]
Coordinates
chr17:57038530-57041654:-
Coord C1 exon
chr17:57041574-57041654
Coord A exon
chr17:57039818-57039973
Coord C2 exon
chr17:57038530-57038682
Length
156 bp
Sequences
Splice sites
3' ss Seq
AGCAGCGGCTGTTCTTGCAGGTT
3' ss Score
6.46
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
AGCTGGGAGCCAGATAGACGCCCCAGAGGACGCTGAGACTGGGACCTTAATCCTTCAGCAACTATGGGAGTCCATCTCGAG
Seq A exon
GTTCTGGACACGGGAGAGCAGCTGATGGTCCCTGTGGATGTCTTGGAAGAGGAAAACAAGGGGACCCTGTGGAAGTTTCTGCTCTCTGGAGCCATGGCTGGGGCAGTGTCTCGCACAGGGACAGCACCTCTGGACAGAGCCAGGGTGTACATGCAG
Seq C2 exon
GTGTACTCCTCCAAGAGCAACTTCAGAAACCTGCTGAGTGGACTGCGGAGCCTGGTCCAGGAGGGCGGCGTCCGCTCCCTCTGGCGGGGCAATGGCATCAACGTGCTCAAGATCGCCCCAGAGTATGCTATCAAGTTCTCTGTCTGTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011486_MULTIEX2-3/3=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0015322=Mito_carr=PU(35.1=63.5)
C2:
PF0015322=Mito_carr=FE(53.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCAGATAGACGCCCCAG
R:
TGCTCACAGACAGAGAACTTGA
Band lengths:
227-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types