RnoEX0081951 @ rn6
Exon Skipping
Gene
ENSRNOG00000048853 | Slc25a41
Description
solute carrier family 25, member 41 [Source:RGD Symbol;Acc:1588585]
Coordinates
chr9:10004805-10007662:+
Coord C1 exon
chr9:10004805-10004929
Coord A exon
chr9:10006314-10006469
Coord C2 exon
chr9:10007510-10007662
Length
156 bp
Sequences
Splice sites
3' ss Seq
AGTGGCCGTTGTTCTTGCAGGTT
3' ss Score
10.77
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
CTGCCCCTAAAATCACAAGGCCAGATAACCAGCCACTCTCAACTGGGAACTGGATAGACGCTCCAGGAAACGCTGAGACTGGGAGCCTAATCCTTCAGGCGGCAACTATGGGAGTCCATCTGGAG
Seq A exon
GTTCTGGACACAGGAGAGCAGCTGATGGTTCCTGGGGATGTCTTGGAAGAGGAAAACAAGGGGACCCTGTGGAAGTTTCTGCTCTCCGGAGCCATGGCTGGGGCAGTGTCTCGCACAGGGACAGCACCTCTGGACAGAGCTAGGGTGTACATGCAG
Seq C2 exon
GTATACTCCTCCAAAAGTAACTTCAGGCACCTGCTGAGTGGCCTGCGGAGCCTGGTCCAGGAGGGCGGTATCCGCTCACTCTGGCGGGGCAATGGTATAAACGTGCTCAAGATCGCCCCGGAGTACGCTATCAAGTTCTCTGTCTTTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048853-'3-2,'3-0,6-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0015322=Mito_carr=PU(35.1=63.5)
C2:
PF0015322=Mito_carr=FE(53.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCCTAAAATCACAAGGCC
R:
GGGCGATCTTGAGCACGTTTA
Band lengths:
242-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]