GgaEX1053086 @ galGal4
Exon Skipping
Gene
ENSGALG00000005095 | SLC25A25
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 [Source:HGNC Symbol;Acc:HGNC:20663]
Coordinates
chr17:4798964-4800891:-
Coord C1 exon
chr17:4800780-4800891
Coord A exon
chr17:4799865-4800023
Coord C2 exon
chr17:4798964-4799116
Length
159 bp
Sequences
Splice sites
3' ss Seq
ATCCTTCTGTTCTTTTGCAGATC
3' ss Score
12.97
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CATGGATAAAAATGGGACGATGACAATTGACTGGAACGAGTGGCGAGACTATCACCTGCTGCACCCAGTGGAGAACATTCCTGAGATCATCCTGTACTGGAAGCACTCCACG
Seq A exon
ATCTTTGATGTAGGAGAGAATCTGACTGTCCCTGATGAGTTCACAGTGGAAGAGAGGCAGACAGGGATGTGGTGGAGACATCTGGTTGCAGGTGGAGGTGCAGGTGCCGTGTCCAGAACCTGTACAGCTCCCTTGGATCGCTTGAAAGTGCTCATGCAG
Seq C2 exon
GTTCATGCCTCCCGCAGTAACAACATGTGTATCATTGGTGGTTTTACTCAAATGATCCGAGAGGGTGGAACAAGGTCACTGTGGAGGGGGAATGGCATCAACGTGCTGAAGATTGCACCAGAGTCTGCCATCAAGTTCATGGCTTATGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005095-'9-12,'9-11,10-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(27.4=44.7)
A:
PF0015322=Mito_carr=PU(35.1=62.3)
C2:
PF0015322=Mito_carr=FE(53.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACGATGACAATTGACTGG
R:
CCATGAACTTGATGGCAGACTCT
Band lengths:
242-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]