RnoEX0081872 @ rn6
Exon Skipping
Gene
ENSRNOG00000014338 | Slc25a25
Description
solute carrier family 25 member 25 [Source:RGD Symbol;Acc:628666]
Coordinates
chr3:11445586-11448343:-
Coord C1 exon
chr3:11448232-11448343
Coord A exon
chr3:11446964-11447122
Coord C2 exon
chr3:11445586-11445738
Length
159 bp
Sequences
Splice sites
3' ss Seq
TCTGCTTGTCTTCCCCATAGATC
3' ss Score
11.78
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CATGGATAAGAATGGGACAATGACCATCGACTGGAACGAGTGGAGGGACTACCACCTCCTGCACCCTGTGGAGAACATCCCTGAGATCATCCTGTACTGGAAGCACTCGACG
Seq A exon
ATCTTCGATGTTGGTGAGAATCTGACAGTCCCAGATGAGTTCACAGTGGAGGAGAGGCAGACAGGGATGTGGTGGAGGCACCTGGTGGCAGGAGGTGGTGCAGGGGCAGTTTCCAGAACCTGCACTGCCCCCCTGGACAGACTGAAGGTGCTCATGCAG
Seq C2 exon
GTCCATGCCTCCCGCAGCAACAACATGTGCATCATAGGTGGATTCACACAGATGATTCGAGAAGGGGGCGCCAAGTCCCTCTGGAGGGGCAATGGCATCAATGTCCTCAAAATTGCCCCTGAGTCAGCCATCAAGTTCATGGCATATGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014338-'12-7,'12-6,13-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(25.8=44.7)
A:
PF0015322=Mito_carr=PU(35.1=62.3)
C2:
PF0015322=Mito_carr=FE(53.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACAATGACCATCGACTG
R:
CCATGAACTTGATGGCTGACTCA
Band lengths:
242-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]