DreEX6011621 @ danRer10
Exon Skipping
Gene
ENSDARG00000035468 | slc25a25b
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25b [Source:ZFIN;Acc:ZDB-GENE-060526-340]
Coordinates
chr5:31196819-31201350:+
Coord C1 exon
chr5:31196819-31196930
Coord A exon
chr5:31200005-31200163
Coord C2 exon
chr5:31201198-31201350
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTCTCATGTCCTCTTTACAGATA
3' ss Score
11.24
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
TATGGATAAAAATGGTACGATGACGATTGACTGGAACGAGTGGAGAGACTATCACCTCCTTCACCCCGCCGAAAACATTCCCGAAATCATCCTCTACTGGAAACACTCTACG
Seq A exon
ATATTTGACGTGGGGGAAAGTATGTTGGTACCGGATGAGTTTACGGCAGAGGAGAAGAACACAGGAATGTGGTGGCGACACCTGGTAGCAGGAGGTGGAGCAGGCGCTGTGTCCCGTACCTGTACTGCACCTCTGGACCGCCTCAAAGTTCTCATGCAG
Seq C2 exon
GTTCATGCAACGCGCAGTAACAGCATGGGTATCGCTGGAGGATTCACCCAGATGATTCGCGAGGGTGGACTGCGCTCACTGTGGAGAGGCAATGGGATCAATGTTTTGAAGATTGCACCTGAATCTGCTATCAAGTTCATGGCATATGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035468-'7-6,'7-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(25.4=44.7),PF118483=DUF3368=PD(5.3=5.3)
A:
PF0015322=Mito_carr=PU(35.1=62.3)
C2:
PF0015322=Mito_carr=FE(53.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACGATTGACTGGAACGAGTGG
R:
CTGCTCATATGCCATGAACTTGA
Band lengths:
243-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]