BtaEX0032883 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011912 | SLC25A25
Description
Bos taurus solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 (SLC25A25), mRNA. [Source:RefSeq mRNA;Acc:NM_001038145]
Coordinates
chr11:98754302-98757173:+
Coord C1 exon
chr11:98754302-98754413
Coord A exon
chr11:98755636-98755794
Coord C2 exon
chr11:98757021-98757173
Length
159 bp
Sequences
Splice sites
3' ss Seq
GGTGTTGGCGTTCCTCACAGATC
3' ss Score
7.97
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CATGGACAAAAATGGCACGATGACCATCGACTGGAACGAGTGGCGAGACTATCACCTCCTGCACCCCGTGGAGAACATCCCTGAGATCATCCTCTACTGGAAGCACTCCACG
Seq A exon
ATCTTTGATGTGGGTGAGAATCTGACAGTCCCCGATGAGTTCACGGTGGAGGAGAGGCAGACGGGGATGTGGTGGAGGCACCTGGTGGCCGGCGGTGGGGCGGGGGCCGTATCGAGAACCTGCACGGCCCCCCTGGACAGACTCAAGGTGCTCATGCAG
Seq C2 exon
GTCCACGCCTCCCGCAGCAACAACATGTGCATCGTGGGTGGGTTCACGCAGATGATTCGAGAAGGAGGGGCCCGATCACTCTGGCGGGGCAATGGCATCAACGTCCTCAAAATCGCCCCCGAGTCGGCCATCAAATTCATGGCCTACGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011912-'8-5,'8-4,10-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(25.8=44.7)
A:
PF0015322=Mito_carr=PU(35.1=62.3)
C2:
PF0015322=Mito_carr=FE(53.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAAAAATGGCACGATGACC
R:
CATGAATTTGATGGCCGACTCG
Band lengths:
250-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development