GgaEX1053086 @ galGal3
Exon Skipping
Gene
ENSGALG00000005095 | F1NYW3_CHICK
Description
NA
Coordinates
chr17:5433968-5435895:-
Coord C1 exon
chr17:5435784-5435895
Coord A exon
chr17:5434869-5435027
Coord C2 exon
chr17:5433968-5434120
Length
159 bp
Sequences
Splice sites
3' ss Seq
ATCCTTCTGTTCTTTTGCAGATC
3' ss Score
12.97
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CATGGATAAAAATGGGACGATGACAATTGACTGGAACGAGTGGCGAGACTATCACCTGCTGCACCCAGTGGAGAACATTCCTGAGATCATCCTGTACTGGAAGCACTCCACG
Seq A exon
ATCTTTGATGTAGGAGAGAATCTGACTGTCCCTGATGAGTTCACAGTGGAAGAGAGGCAGACAGGGATGTGGTGGAGACATCTGGTTGCAGGTGGAGGTGCAGGTGCCGTGTCCAGAACCTGTACAGCTCCCTTGGATCGCTTGAAAGTGCTCATGCAG
Seq C2 exon
GTTCATGCCTCCCGCAGTAACAACATGTGTATCATTGGTGGTTTTACTCAAATGATCCGAGAGGGTGGAACAAGGTCACTGTGGAGGGGGAATGGCATCAACGTGCTGAAGATTGCACCAGAGTCTGCCATCAAGTTCATGGCTTATGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005095-'7-12,'7-11,8-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(27.4=44.7)
A:
PF0015322=Mito_carr=PU(35.1=62.3)
C2:
PF0015322=Mito_carr=FE(53.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACGATGACAATTGACTGG
R:
CCATGAACTTGATGGCAGACTCT
Band lengths:
242-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]