MmuEX6100556 @ mm9
Exon Skipping
Gene
ENSMUSG00000026819 | Slc25a25
Description
solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25 [Source:MGI Symbol;Acc:MGI:1915913]
Coordinates
chr2:32273244-32275936:-
Coord C1 exon
chr2:32275825-32275936
Coord A exon
chr2:32274568-32274726
Coord C2 exon
chr2:32273244-32273396
Length
159 bp
Sequences
Splice sites
3' ss Seq
TCTGCTTGTCTCCCCCATAGATC
3' ss Score
11.22
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CATGGATAAGAATGGCACGATGACCATCGACTGGAACGAGTGGAGGGACTACCACCTCCTGCACCCTGTGGAGAACATCCCGGAGATCATCCTGTACTGGAAGCACTCGACG
Seq A exon
ATCTTCGATGTCGGTGAGAATCTGACAGTCCCAGATGAGTTCACAGTGGAGGAGAGGCAGACGGGGATGTGGTGGAGGCACCTGGTGGCAGGAGGTGGGGCAGGGGCAGTTTCCAGAACCTGCACTGCCCCCCTGGACAGACTGAAGGTGCTCATGCAG
Seq C2 exon
GTCCATGCCTCCCGCAGCAACAACATGTGCATCGTAGGTGGATTCACACAGATGATTCGAGAAGGGGGAGCCAAGTCACTCTGGCGGGGCAACGGCATCAATGTCCTCAAAATTGCCCCTGAGTCGGCCATCAAATTCATGGCATATGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026819-'9-14,'9-13,11-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(24.0=47.4)
A:
PF0015322=Mito_carr=PU(35.1=62.3)
C2:
PF0015322=Mito_carr=FE(53.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGATAAGAATGGCACGATGACCA
R:
AATTTGATGGCCGACTCAGGG
Band lengths:
246-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: