BtaEX6038718 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020017 | SLC25A41
Description
Bos taurus solute carrier family 25, member 41 (SLC25A41), mRNA. [Source:RefSeq mRNA;Acc:NM_001075841]
Coordinates
chr7:19251323-19252680:+
Coord C1 exon
chr7:19251323-19251590
Coord A exon
chr7:19251841-19251996
Coord C2 exon
chr7:19252528-19252680
Length
156 bp
Sequences
Splice sites
3' ss Seq
GAGCTGGGTCTGTCCTGCAGGTG
3' ss Score
8.68
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
ACAGTTGCTGGATGGGCCAACCTCTGGCCAGAGATTTGAACCCGAGTGTCCTGACCCTCCAGCTATGATGGGAGCCCAACCAGAGCAAACTCAGAAGCCCAGCTCGCGGGTCCAGACCCTGTTTAAGAGGGTCAAGGCCTTCTTCACCAAAACTGGTCCCCCACCCCCACCCCCAGCCCCCTCCCGGAATCTGGGCTGTACCCACGTGTATGGGTACGTGTTTGGGCACCTGGGGGAAAGAGAACCGGAGCATTCCCCATCGCAGCAG
Seq A exon
GTGCTGGACACAGGGGAGCAGCTGATGGTCCCCGTGGATGTCCTGGAAGTGGATAATGAGGGAGCCTTGTGGAAGTTCCTCCTCTCGGGAGCCATGGCTGGGGCAGTGTCTCGCACAGGCACGGCCCCTCTGGACCGTGCCAAGGTGTACATGCAG
Seq C2 exon
GTCTACTCCTCCAAGAAGAATTTCATGAATCTGCTGGGAGGTCTCCGGAGCCTGATCCAGGAAGGGGGCATCCGTTCACTCTGGAGGGGCAACGGTATCAATGTGCTCAAAATTGCCCCGGAGTACGCCATCAAGTTCTCTGTCTTCGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020017-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.567 A=0.058 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0015322=Mito_carr=PU(35.1=63.5)
C2:
PF0015322=Mito_carr=FE(53.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACCAAAACTGGTCCCCC
R:
TACTCCGGGGCAATTTTGAGC
Band lengths:
252-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]