DreEX0072313 @ danRer10
Exon Skipping
Gene
ENSDARG00000010572 | slc25a25a
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25a [Source:ZFIN;Acc:ZDB-GENE-040426-2396]
Coordinates
chr8:2551681-2555710:-
Coord C1 exon
chr8:2555599-2555710
Coord A exon
chr8:2552839-2552997
Coord C2 exon
chr8:2551681-2551833
Length
159 bp
Sequences
Splice sites
3' ss Seq
CCTGACCTGTTTCGGTGTAGATC
3' ss Score
8.6
5' ss Seq
CAGGTACGC
5' ss Score
10.12
Exon sequences
Seq C1 exon
CATGGACAAAAACGGCACAATGACTATTGACTGGAATGAATGGAAGAAGTATCCCACGCTACAGCCTGCCGAAAACATTCCCGAAATCATCCTGTACTGGAAACACTCAACG
Seq A exon
ATCTTCGATGTTGGTGAGAGTTTGATGGTGCCAGATGAGTTTACAGTGGAAGAGCACCTAACTGGGATGTGGTGGAGGCATCTGGTGTCCGGTGGAGGAGCTGGAGCTGTTTCTCGAACCTGCACCGCTCCACTTGACCGCCTTAAAGTGCTCATGCAG
Seq C2 exon
GTTCATGGTTGTCAGGGGAAAAGCATGTGTTTAATGAGTGGACTCACACAGATGATTAAAGAAGGAGGGGTTCGCTCACTATGGAGGGGCAATGGCATTAATGTCATCAAAATCGCACCTGAGACTGCGCTCAAGTTCATGGCTTATGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010572-'8-5,'8-4,11-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(25.8=44.7)
A:
PF0015322=Mito_carr=PU(34.4=60.4)
C2:
PF0015322=Mito_carr=FE(53.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACAAAAACGGCACAATGAC
R:
CCATGAACTTGAGCGCAGTCT
Band lengths:
252-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]