DreEX6017581 @ danRer10
Exon Skipping
Gene
ENSDARG00000024708 | slc25a23b
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23b [Source:ZFIN;Acc:ZDB-GENE-040724-220]
Coordinates
chr3:34094955-34095575:+
Coord C1 exon
chr3:34094955-34095066
Coord A exon
chr3:34095173-34095331
Coord C2 exon
chr3:34095429-34095575
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTATGAATTATGCATTTCAGATG
3' ss Score
6.66
5' ss Seq
CAGGTTCAG
5' ss Score
2.78
Exon sequences
Seq C1 exon
CATAGACAGAGATGGCACTATGACCATTGACTGGAATGAGTGGCGGGACCACTTTCTGTTTAACCCCTTGCACAACATGGAGGACATCGCCCACTACTGGAAACACTCTCTG
Seq A exon
ATGTTGGACATTGGAGAGCAGCTGACTGTGCCGGATGAGTTTTCAGAAAAGGAGCGTCGGTCTGGTGTTGTGTGGAGACAGCTGGTGGCCGGAGCAATGGCAGGAGCCGTGTCGCGAACAGGAACTGCCCCTTTGGACCGTCTGAAAGTTTTCCTACAG
Seq C2 exon
GTTCATGGCACCAGTGGTGTGACTTTGTTTAGTGGATTGCAAGGTATGGTGCGGGAGGGAGGATTGAGGTCCCTTTGGAGAGGCAACGGAATTAATGTCCTCAAAATTGCCCCGGAGTCAGCTATCAAATTCATGGCTTATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000024708-'4-5,'4-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(28.1=47.4)
A:
PF0015322=Mito_carr=PU(35.9=62.3)
C2:
PF0015322=Mito_carr=FE(52.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAGAGATGGCACTATGACCA
R:
TGAATTTGATAGCTGACTCCGGG
Band lengths:
242-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]