DreEX6033903 @ danRer10
Exon Skipping
Gene
ENSDARG00000005690 | slc25a23a
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23a [Source:ZFIN;Acc:ZDB-GENE-121214-154]
Coordinates
chr1:54306795-54309367:-
Coord C1 exon
chr1:54309256-54309367
Coord A exon
chr1:54307621-54307779
Coord C2 exon
chr1:54306795-54306947
Length
159 bp
Sequences
Splice sites
3' ss Seq
ACAGCCTTGGTGTGGTGCAGATG
3' ss Score
5.7
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
TATGGATAAAGATCATTCCATGACTATTGACTGGATCGAGTGGCGAGATCACTTCCTGTTCAACCCTCTACACAACATGGAGGAAATCGCTCAGTTCTGGAAGCACTCAGTG
Seq A exon
ATGCTGGACATCGGGGAGCACCTGACGGTTCCAGACGAGTTCTCAGAGAAGGAGAAGCGATCCGGGTTCGTGTGGCGGCAGCTGATGGCAGGAGCCGTGGCAGGATCAGTGTCCCGGACAGGAACCGCACCGCTCGACAGACTCAAGGTCTTCCTGCAG
Seq C2 exon
GTTCACGGTCAGAGCTCAGATAAGGGGAACGTGTGGAGTGGTCTGCGGGCGATGGTGAAGGAGGGAGGACTCACTGCGCTCTGGAGAGGAAACGGCATTAATGTGCTTAAGATCGCTCCGGAGACTGCCATCAAATTCCTGGCTTATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005690-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(28.6=47.4)
A:
PF0015322=Mito_carr=PU(35.1=62.3)
C2:
PF0015322=Mito_carr=FE(53.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTATTGACTGGATCGAGTGGCG
R:
CTGTTCATAAGCCAGGAATTTGATGG
Band lengths:
242-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]