MmuEX6078689 @ mm10
Exon Skipping
Gene
ENSMUSG00000046329 | Slc25a23
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 [Source:MGI Symbol;Acc:MGI:1914222]
Coordinates
chr17:57053547-57055385:-
Coord C1 exon
chr17:57055274-57055385
Coord A exon
chr17:57053784-57053942
Coord C2 exon
chr17:57053547-57053699
Length
159 bp
Sequences
Splice sites
3' ss Seq
TCCACAGCCCCTGTTCTCAGGTC
3' ss Score
7.11
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CATGGACCGCGATGGCACCATGACCATTGATTGGCAGGAATGGCGAGACCACTTTCTGTTGCACTCTCTGGAGAACGTGGAGGATGTCCTGTATTTCTGGAAGCATTCTACA
Seq A exon
GTCCTGGACATCGGTGAATGCCTGACGGTGCCTGATGAGTTCTCCCAGGAAGAGAAACTTACAGGAATGTGGTGGAAACAGCTGGTGGCTGGTGCAGTGGCTGGCGCTGTGTCACGGACAGGCACAGCTCCTCTGGACCGACTCAAGGTATTCATGCAG
Seq C2 exon
GTCCACGCCTCAAAGTCCAACCGGCTTAACATTCTAGGGGGCCTGAGAAACATGATTCAAGAAGGGGGTGTCTTGTCCCTCTGGCGGGGCAACGGCATCAACGTGCTCAAGATAGCCCCCGAGTCTGCCATCAAATTCATGGCTTATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046329-'6-8,'6-6,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.002 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(26.9=47.4)
A:
PF0015322=Mito_carr=PU(34.4=60.4)
C2:
PF0015322=Mito_carr=FE(53.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGGCACCATGACCATTGA
R:
TGAATTTGATGGCAGACTCGGG
Band lengths:
242-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types